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1.Department of Applied Physics, Graduate School of Engineering, The University of Osaka, Osaka, Japan
2.Advanced Photonics and Biosensing Open Innovation Laboratory, AIST-Osaka University, Osaka, Japan
3.Transdimensional Life Imaging Division, Institute for Open and Transdisciplinary Research Initiatives, The University of Osaka, Osaka, Japan
4.Department of Pathology and Cell Regulation, Graduate School of Medical Science, Kyoto Prefectural University of Medicine, Kyoto, Japan
5.Department of Dermatology, Course of Integrated Medicine, Graduate School of Medicine, The University of Osaka, Osaka, Japan
6.Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
7.Department of Biomolecular Science and Engineering, SANKEN, The University of Osaka, Osaka, Japan
8.Immunology Frontier Research Center, The University of Osaka, Osaka, Japan
9.Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich-Schiller-University Jena, Jena, Germany
10.Leibniz Institute of Photonic Technology, Jena, Germany
Masahito Yamanaka (yamanaka@ap.eng.osaka-u.ac.jp)
Katsumasa Fujita (fujita@ap.eng.osaka-u.ac.jp)
Received:21 December 2024,
Revised:2025-06-17,
Accepted:26 June 2025,
Published Online:23 August 2025,
Published:31 October 2025
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Tsuji, K. et al. Time-deterministic cryo-optical microscopy. Light: Science & Applications, 14, 3069-3081 (2025).
Tsuji, K. et al. Time-deterministic cryo-optical microscopy. Light: Science & Applications, 14, 3069-3081 (2025). DOI: 10.1038/s41377-025-01941-8.
Fluorescence microscopy enables the visualization of cellular morphology
molecular distribution
ion distribution
and their dynamic behaviors during biological processes. Enhancing the signal-to-noise ratio (SNR) in fluorescence imaging improves the quantification accuracy and spatial resolution; however
achieving high SNR at fast image acquisition rates
which is often required to observe cellular dynamics
still remains a challenge. In this study
we developed a technique to rapidly freeze biological cells in milliseconds during optical microscopy observation. Compared to chemical fixation
rapid freezing provides rapid immobilization of samples while more effectively preserving the morphology and conditions of cells. This technique combines the advantages of both live-cell and cryofixation microscopy
i.e.
temporal dynamics and high SNR snapshots of selected moments
and is demonstrated by fluorescence and Raman microscopy with high spatial resolution and quantification under low temperature conditions. Furthermore
we also demonstrated that intracellular calcium dynamics can be frozen rapidly and visualized using fluorescent ion indicators
suggesting that ion distribution and conformation of the probe molecules can be fixed both spatially and temporally. These results confirmed that our technique can time-deterministically suspend and visualize cellular dynamics while preserving molecular and ionic states
indicating the potential to provide detailed insights into sample dynamics with improved spatial resolution and temporal accuracy in observations.
Kneen, M. et al. Green fluorescent protein as a noninvasive intracellular pH indicator. Biophys. J. 74 , 1591–1599 (1998)..
Lou, Z. R., Li, P. & Han, K. L. Redox-responsive fluorescent probes with different design strategies. Acc. Chem. Res. 48 , 1358–1368 (2015)..
Vu, C. Q. et al. A highly-sensitive genetically encoded temperature indicator exploiting a temperature-responsive elastin-like polypeptide. Sci. Rep. 11 , 16519 (2021)..
Morishita, Y. et al. Generation of myocyte agonal Ca 2+ waves and contraction bands in perfused rat hearts following irreversible membrane permeabilisation. Sci. Rep. 13 , 803 (2023)..
Almada, P. et al. Automating multimodal microscopy with NanoJ-Fluidics. Nat. Commun. 10 , 1223 (2019)..
Charles, A. C. et al. Intercellular signaling in glial cells: calcium waves and oscillations in response to mechanical stimulation and glutamate. Neuron 6 , 983–992 (1991)..
Rust, M. J., Bates, M. & Zhuang, X. W. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat. Methods 3 , 793–796 (2006)..
Betzig, E. et al. Imaging intracellular fluorescent proteins at nanometer resolution. Science 313 , 1642–1645 (2006)..
Pavani, S. R. P. et al. Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function. Proc. Natl. Acad. Sci. USA 106 , 2995–2999 (2009)..
Hell, S. W. & Wichmann, J. Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy. Opt. Lett. 19 , 780–782 (1994)..
Balzarotti, F. et al. Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes. Science 355 , 606–612 (2017)..
Gustafsson, M. G. L. et al. Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination. Biophys. J. 94 , 4957–4970 (2008)..
Ohno, N., Terada, N. & Ohno, S. Histochemical analyses of living mouse liver under different hemodynamic conditions by “in vivo cryotechnique”. Histochem. Cell Biol. 126 , 389–398 (2006)..
Terada, N. et al. Application of “in vivo cryotechnique” to detect erythrocyte oxygen saturation in frozen mouse tissues with confocal Raman cryomicroscopy. J. Struct. Biol. 163 , 147–154 (2008)..
Gilkey, J. C. & Staehelin, L. A. Advances in ultrarapid freezing for the preservation of cellular ultrastructure. J. Electron Microsc. Tech. 3 , 177–210 (1986)..
McDowall, A. W. et al. Electron microscopy of frozen hydrated sections of vitreous ice and vitrified biological samples. J. Microsc. 131 , 1–9 (1983)..
Saibil, H. R. Cryo-EM in molecular and cellular biology. Mol. Cell 82 , 274–284 (2022)..
Neuhaus, E. M. et al. Ethane-freezing/methanol-fixation of cell monolayers: a procedure for improved preservation of structure and antigenicity for light and electron microscopies. J. Struct. Biol. 121 , 326–342 (1998)..
Laporte, M. H. et al. Visualizing the native cellular organization by coupling cryofixation with expansion microscopy (Cryo-ExM). Nat. Methods 19 , 216–222 (2022)..
Kaufmann, R. et al. Super-resolution microscopy using standard fluorescent proteins in intact cells under cryo-conditions. Nano Lett. 14 , 4171–4175 (2014)..
Chang, Y. W. et al. Correlated cryogenic photoactivated localization microscopy and cryo-electron tomography. Nat. Methods 11 , 737–739 (2014)..
Weisenburg er, S. et al. Cryogenic optical localization provides 3D protein structure data with Angstrom resolution. Nat. Methods 14 , 141–144 (2017)..
Dahlberg, P. D. et al. Cryogenic single-molecule fluorescence annotations for electron tomography reveal in situ organization of key proteins in Caulobacter . Proc. Natl. Acad. Sci. USA 117 , 13937–13944 (2020)..
Phillips, M. A. et al. CryoSIM: super-resolution 3D structured illumination cryogenic fluorescence microscopy for correlated ultrastructural imaging. Optica 7 , 802–812 (2020)..
Kounatidis, I. et al. 3D correlative cryo-structured illumination fluorescence and soft X-ray microscopy elucidates reovirus intracellular release pathway. Cell 182 , 515–530.e17 (2020)..
Hoffman, D. P. et al. Correlative three-dimensional super-resolution and block-face electron microscopy of whole vitreously frozen cells. Science 367 , eaaz5357 (2020)..
Moser, F. et al. Cryo-SOFI enabling low-dose super-resolution correlative light and electron cryo-microscopy. Proc. Natl. Acad. Sci. USA 116 , 4804–4809 (2019)..
Mony, M. C. & Larras-Regard, E. Imaging of subcellular structures by scanning ion microscopy and mass spectrometry. Advantage of cryofixation and freeze substitution procedure over chemical preparation. Biol. Cell 89 , 199–210 (1997)..
Perrin, L. et al. Evaluation of sample preparation methods for single cell quantitative elemental imaging using proton or synchrotron radiation focused beams. J. Anal. Spectrom. 30 , 2525–2532 (2015)..
Xu, H. N. et al. Optical redox imaging of fixed unstained muscle slides reveals useful biological information. Mol. Imaging Biol. 21 , 417–425 (2019)..
Dahlberg, P. D. et al. Identification of PAmKate as a red photoactivatable fluorescent protein for cryogenic super-resolution imaging. J. Am. Chem. Soc. 140 , 12310–12313 (2018)..
Hulleman, C. N. et al. Photon yield enhancement of red fluorophores at cryogenic temperatures. ChemPhysChem 19 , 1774–1780 (2018)..
Li, W. X. et al. Ultra-stable and versatile widefield cryo-fluorescence microscope for single-molecule localization with sub-nanometer accuracy. Opt. Express 23 , 3770–3783 (2015)..
Baskin, T. I. et al. Cryofixing single cells and multicellular specimens enhances structure and immunocytochemistry for light microscopy. J. Microsc. 182 , 149–161 (1996)..
Kaufmann, R., Hagen, C. & Grünewald, K. Fluorescence cryo-microscopy: current challenges and prospects. Curr. Opin. Chem. Biol. 20 , 86–91 (2014)..
Schwartz, C. L. et al. Cryo-fluorescence microscopy facilitates correlations between light and cryo-electron microscopy and reduces the rate of photobleaching. J. Microsc. 227 , 98–109 (2007)..
Liu, B. et al. Three-dimensional super-resolution protein localization correlated with vitrified cellular context. Sci. Rep. 5 , 13017 (2015)..
Perez, D. et al. Exploring transient states of PAmKate to enable improved cryogenic single-molecule imaging. J. Am. Chem. Soc. 146 , 28707–28716 (2024)..
Perez, D. et al. Identification and demonstration of roGFP2 as an environmental sensor for cryogenic correlative light and electron microscopy. J. Struct. Biol. 214 , 107881 (2022)..
Masip, M. E. et al. Reversible cryo-arrest for imaging molecules in living cells at high spatial resolution. Nat. Methods 13 , 665–672 (2016)..
Fuest, M. et al. Cryofixation during live-imaging enables millisecond time-correlated light and electron microscopy. J. Microsc. 272 , 87–95 (2018)..
Fuest, M. et al. In situ microfluidic cryofixation for cryo focused ion beam milling and cryo electron tomography. Sci. Rep. 9 , 19133 (2019)..
Huebinger, J. et al. Ultrarapid cryo-arrest of living cells on a microscope enables multiscale imaging of out-of-equilibrium molecular patterns. Sci. Adv. 7 , eabk0882 (2021)..
Dubochet, J. & McDowall, A. W. Vitrification of pure water for electron microscopy. J. Microsc. 124 , 3–4 (1981)..
Woodruff, M. L. et al. Measurement of cytoplasmic calcium concentration in the rods of wild-type and transducin knock-out mice. J. Physiol. 542 , 843–854 (2002)..
Tsukamoto, S. et al. Simultaneous imaging of local calcium an d single sarcomere length in rat neonatal cardiomyocytes using yellow Cameleon-Nano140. J. Gen. Physiol. 148 , 341–355 (2016)..
Thomas, D. et al. A comparison of fluorescent Ca 2+ indicator properties and their use in measuring elementary and global Ca 2+ signals. Cell Calcium 28 , 213–223 (2000)..
Chen, F., Tillberg, P. W. & Boyden, E. S. Expansion microscopy. Science 347 , 543–548 (2015)..
Ellis-Davies, G. C. R. & Barsotti, R. J. Tuning caged calcium: photolabile analogues of EGTA with improved optical and chelation properties. Cell Calcium 39 , 75–83 (2006)..
Nagai, T. et al. Expanded dynamic range of fluorescent indicators for Ca 2+ by circularly permuted yellow fluorescent proteins. Proc. Natl. Acad. Sci. USA 101 , 10554–10559 (2004)..
Mizushima, K. et al. Raman microscopy of cryofixed biological specimens for high-resolution and high-sensitivity chemical imaging. Sci. Adv. 10 , eadn0110 (2024)..
Cheng, J. X. & Xie, X. S. Vibrational spectroscopic imaging of living systems: a n emerging platform for biology and medicine. Science 350 , aaa8870 (2015)..
Greener, J. G. et al. A guide to machine learning for biologists. Nat. Rev. Mol. Cell Biol. 23 , 40–55 (2022)..
Gee, K. R. et al. Chemical and physiological characterization of fluo-4 Ca 2+ -indicator dyes. Cell Calcium 27 , 97–106 (2000)..
Perez-Terzic, C., Stehno-Bittel, L. & Clapham, D. E. Nucleoplasmic and cytoplasmic differences in the fluorescence properties of the calcium indicator Fluo-3. Cell Calcium 21 , 275–282 (1997)..
Bäuerlein, F. J. B. et al. Cryo-electron tomography of large biological specimens vitrified by plunge freezing. Print at https://doi.org/10.1101/2021.04.14.437159 https://doi.org/10.1101/2021.04.14.437159 (2023).
Zhao, W. S. et al. Sparse deconvolution improves the resolution of live-cell super-resolution fluorescence microscopy. Nat. Biotechnol. 40 , 606–617 (2022)..
Mo, Y. Q. et al. Quantitative structured illumination microscopy via a physical model-based background filter ing algorithm reveals actin dynamics. Nat. Commun. 14 , 3089 (2023)..
Cao, R. J. et al. Dark-based optical sectioning assists background removal in fluorescence microscopy. Nat. Methods . https://doi.org/10.1038/s41592-025-02667-6 https://doi.org/10.1038/s41592-025-02667-6 (2025)..
Moor, H.&Riehle, U. “Snap-freezing under high pressure: a new fixation technique for freeze-etching” in Electron microscopy 1968, vol. 2 Proc. 4th Eur. Reg. Conf. Electron Microsc., Rome, D. Steve Bocciarelli, Eds. pp 33-34.
Dahl, R. & Staehelin, L. A. High-pressure freezing for the preservation of biological structure: theory and practice. J. Electron Microsc. Tech. 13 , 165–174 (1989)..
Buser, C. et al. Quantitative investigation of murine cytomegalovirus nucleocapsid interaction. J. Microsc. 228 , 78–87 (2007)..
Dodo, K., Fujita, K. & Sodeoka, M. Raman spectroscopy for chemical biology research. J. Am. Chem. Soc. 144 , 19651–19667 (2022)..
Chen, C.et al. Multiplexed live-cell profiling with Raman probes. Nat. Commun. 12 , 3405 (2021)..
Faoro, R. et al. Aberration-corrected cryoimmersion light microscopy. Proc. Natl. Acad. Sci. USA 115 , 1204–1209 (2018)..
Nahmani, M. et al. High-numerical-aperture cryogenic light microscopy for increased precision of superresolution reconstructions. Proc. Natl Acad. Sci. USA 114 , 3832–3836 (2017)..
Wang, L. et al. Solid immersion microscopy images cells under cryogenic conditions with 12 nm resolution. Commun. Biol. 2 , 74 (2019)..
Jehl, B. et al. The use of propane/isopentane mixtures for rapid freezing of biological specimens. J. Microsc. 123 , 307–309 (1981)..
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