
1.Center for Nanoscale Science and Technology, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA
2.Maryland NanoCenter, University of Maryland, College Park, MD 20742, USA
3.Engineering Physics Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA
Samuel M. Stavis (samuel.stavis@nist.gov)
Published:2018,
Published Online:11 July 2018,
Received:01 December 2017,
Revised:24 April 2018,
Accepted:01 May 2018
Scan QR Code
Copeland, C. R. et al. Subnanometer localization accuracy in widefield optical microscopy. Light: Science & Applications, 7, 281-295 (2018).
Copeland, C. R. et al. Subnanometer localization accuracy in widefield optical microscopy. Light: Science & Applications, 7, 281-295 (2018). DOI: 10.1038/s41377-018-0031-z.
The common assumption that precision is the limit of accuracy in localization microscopy and the typical absence of comprehensive calibration of optical microscopes lead to a widespread issue—overconfidence in measurement results with nanoscale statistical uncertainties that can be invalid due to microscale systematic errors. In this article
we report a comprehensive solution to this underappreciated problem. We develop arrays of subresolution apertures into the first reference materials that enable localization errors approaching the atomic scale across a submillimeter field. We present novel methods for calibrating our microscope system using aperture arrays and develop aberration corrections that reach the precision limit of our reference materials. We correct and register localization data from multiple colors and test different sources of light emission with equal accuracy
indicating the general applicability of our reference materials and calibration methods. In a first application of our new measurement capability
we introduce the concept of critical-dimension localization microscopy
facilitating tests of nanofabrication processes and quality control of aperture arrays. In a second application
we apply these stable reference materials to answer open questions about the apparent instability of fluorescent nanoparticles that commonly serve as fiducial markers. Our study establishes a foundation for subnanometer localization accuracy in widefield optical microscopy.
Mathai, P. P., Liddle, J. A.&Stavis, S. M. Optical tracking of nanoscale particles in microscale environments.Appl. Phys. Rev.3, 011105 (2016)..
Thompson, R. E., Larson, D. R.&Webb, W. W. Precise nanometer localization analysis for individual fluorescent probes.Biophys. J.82, 2775–2783 (2002)..
McGray, C., Copeland, C. R., Stavis, S. M.&Geist, J. Centroid precision and orientation precision of planar localization microscopy.J. Microsc.263, 238–249 (2016)..
Lindén, M., Ćurić, V., Amselem, E.&Elf, J. Pointwise error estimates in localization microscopy.Nat. Commun.8, 15115 (2017)..
Waters, J. C. Accuracy and precision in quantitative fluorescence microscopy.J. Cell Biol.185, 1135–1148 (2009)..
Deschout, H. et al. Precisely and accurately localizing single emitters in fluorescence microscopy.Nat. Methods11, 253–266 (2014)..
Pertsinidis, A., Zhang, Y. X.&Chu, S. Subnanometre single-molecule localization, registration and distance measurements.Nature466, 647–651 (2010)..
Huhle, A. et al. Camera-based three-dimensional real-time particle tracking at kHz rates and Ångström accuracy.Nat. Commun.6, 5885 (2015)..
Colomb, W., Czerski, J., Sau, J. D.&Sarkar, S. K. Estimation of microscope drift using fluorescent nanodiamonds as fiducial markers.J. Microsc.266, 298–306 (2017)..
Yildiz, A. et al. Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5-nm localization.Science300, 2061–2065 (2003)..
Copeland, C. R., McGray, C. D., Geist, J., Aksyuk, V. A.&Stavis, S. M. Characterization of electrothermal actuation with nanometer and microradian precision.Proceedings of the 2015 18th International Conference on Solid-State Sensors, Actuators and Microsystems. IEEE, Anchorage, AK, USA, pp 792–795 (2015).
Copeland, C. R., McGray, C. D., Geist, J., Aksyuk, V. A.&Stavis, S. M. Transfer of motion through a microelectromechanical linkage at nanometer and microradian scales.Microsyst. Nanoeng.2, 16055 (2016)..
ISO.International Vocabulary of Basic and General Terms in Metrology(VIM). 3rd edn. International Organization for Standardization, Geneva, Switzerland; (2004)..
Farid, H.&Popescu, A. C. Blind removal of lens distortion.J. Opt. Soc. Am. A18, 2072–2078 (2001)..
Mortensen, K. I., Sung, J., Flyvbjerg, H.&Spudich, J. A. Optimized measurements of separations and angles between intra-molecular fluorescent markers.Nat. Commun.6, 8621 (2015)..
Hanser, B. M., Gustafsson, M. G. L., Agard, D. A.&Sedat, J. W. Phase-retrieved pupil functions in wide-field fluorescence microscopy.J. Microsc.216, 32–48 (2004)..
Zheng, G. A., Ou, X. Z., Horstmeyer, R.&Yang, C. H. Characterization of spatially varying aberrations for wide field-of-view microscopy.Opt. Express21, 15131–15143 (2013)..
Dai, X. L., Xie, H. M., Li, C. W., Wu, Z.&Geng, H. X. High-accuracy magnification calibration for a microscope based on an improved discrete fourier transform.Opt. Eng.52, 114102 (2013)..
Reuss, M. et al. Measuring true localization accuracy in super resolution microscopy with DNA-origami nanostructures.New J. Phys.19, 025013 (2017)..
Steinhauer, C., Jungmann, R., Sobey, T. L., Simmel, F. C.&Tinnefeld, P. DNA origami as a nanoscopic ruler for super-resolution microscopy.Angew. Chem. Int. Ed.48, 8870–8873 (2009)..
Treegate, K., Rasamessard, A., Osotchan, T.&Hodak, J. H. X–Y sample scanning stage and calibration method suitable for single-molecule detection.Sens. Actuators B Chem.150, 239–246 (2010)..
DeWitt, M. A., Chang, A. Y., Combs, P. A.&Yildiz, A. Cytoplasmic dynein moves through uncoordinated stepping of the AAA + ring domains.Science335, 221–225 (2012)..
James, J. R.&Vale, R. D. Biophysical mechanism of T-cell receptor triggering in a reconstituted system.Nature487, 64–69 (2012)..
Matsuzawa T., Ryu G., Eda Y., Morita T. Lens evaluation device. US patent 7747101. 29 June 2010.
Pertsinidis, A. et al. Ultrahigh-resolution imaging reveals formation of neuronal SNARE/Munc18 complexes in situ.Proc. Natl. Acad. Sci. USA110, E2812–E2820 (2013)..
Koyama-Honda, I. et al. Fluorescence imaging for monitoring the colocalization of two single molecules in living cells.Biophys. J.88, 2126–2136 (2005)..
Von Diezmann, A., Lee, M. Y., Lew, M. D.&Moerner, W. E. Correcting field-dependent aberrations with nanoscale accuracy in three-dimensional single-molecule localization microscopy.Optica2, 985–993 (2015)..
Copeland C. R., et al. Aperture arrays for subnanometer calibration of optical microscopes. Proceedings of 2017 International Conference on Optical MEMS and Nanophotonics; 13–17 August. IEEE: Santa Fe, NM, USA, pp 1–2 (2017).
Mortensen, K. I.&Flyvbjerg, H. "Calibration-on-the-spot": How to calibrate an EMCCD camera from its images.Sci. Rep.6, 28680 (2016)..
Long, F., Zeng, S. Q.&Huang, Z. L. Effects of fixed pattern noise on single molecule localization microscopy.Phys. Chem. Chem. Phys.16, 21586–21594 (2014)..
Huang, F. et al. Video-rate nanoscopy using sCMOS camera-specific single-molecule localization algorithms.Nat. Methods10, 653–658 (2013)..
Lin, R. S., Clowsley, A. H., Jayasinghe, I. D., Baddeley, D.&Soeller, C. Algorithmic corrections for localization microscopy with sCMOS cameras - characterisation of a computationally efficient localization approach.Opt. Express25, 11701–11716 (2017)..
Douglass, K. M., Sieben, C., Archetti, A., Lambert, A.&Manley, S. Super-resolution imaging of multiple cells by optimized flat-field epi-illumination.Nat. Photonics10, 705–708 (2016)..
Mortensen, K. I., Churchman, L. S., Spudich, J. A.&Flyvbjerg, H. Optimized localization analysis for single-molecule tracking and super-resolution microscopy.Nat. Methods7, 377–381 (2010)..
Abraham, A. V., Ram, S., Chao, J., Ward, E. S.&Ober, R. J. Quantitative study of single molecule location estimation techniques.Opt. Express17, 23352–23373 (2009)..
Hecht E. Optics. 4th edn, Addison Wesley Longman Inc., San Francisco, California, USA (1998).
Masters B. R. Book Rvw: handbook of biological confocal microscopy. 2nd edn. J. B. Pawley (eds).Opt. Eng.35, 2765 (1996)..
Liu, S., Kromann, E. B., Krueger, W. D., Bewersdorf, J.&Lidke,K. A. Three dimensional single molecule localization using a phase retrieved pupil function.Opt. Express21, 29462–29487 (2013)..
Carter, A. R. et al. Stabilization of an optical microscope to 0.1 nm in three dimensions.Appl. Opt.46, 421–427 (2007)..
Grover, G., Mohrman, W.&Piestun, R. Real-time adaptive drift correction for super-resolution localization microscopy.Opt. Express23, 23887–23898 (2015)..
Lee, S. H. et al. Using fixed fiduciary markers for stage drift correction.Opt. Express20, 12177–12183 (2012)..
Balram, K. C. et al. The nanolithography toolbox.J. Res Natl. Inst. Stand. Technol.121, 464–475 (2016)..
Lagarias, J. C., Reeds, J. A., Wright, M. H.&Wright, P. E. Convergence properties of the nelder--mead simplex method in low dimensions.SIAM J. Optim.9, 112–147 (1998)..
Blythe, K. L., Titus, E. J.&Willets, K. A. Objective-induced point spread function aberrations and their impact on super-resolution microscopy.Anal. Chem.87, 6419–6424 (2015)..
Parthasarathy, R. Rapid, accurate particle tracking by calculation of radial symmetry centers.Nat. Methods9, 724–726 (2012)..
Small, A.&Stahlheber, S. Fluorophore localization algorithms for super-resolution microscopy.Nat. Methods11, 267–279 (2014)..
Ma, H. Q., Xu, J. Q., Jin, J. Y., Huang, Y.&Liu, Y. A simple marker-assisted 3D nanometer drift correction method for superresolution microscopy.Biophys. J.112, 2196–2208 (2017)..
Burke, D., Patton, B., Huang, F., Bewersdorf, J.&Booth, M. J. Adaptive optics correction of specimen-induced aberrations in single-molecule switching microscopy.Optica2, 177–185 (2015)..
Zernike, V. F. Beugungstheorie des schneidenver-fahrens und seiner verbesserten form, der phasenkontrastmethode.Physica.1, 689–704 (1934)..
Ahn, S.&Fessler, J. A.Standard errors of mean, variance, and standard deviation estimators. The University of Michigan, Michigan, pp 1–2 (2003).
Arimoto, R.&Murray, J. M. A common aberration with water-immersion objective lenses.J. Microsc.216, 49–51 (2004)..
Lafarge, T.&Possolo, A. The NIST uncertainty machine.NCSLI Meas. J. Meas. Sci.10, 20–27 (2015)..
Postek, M. T.&Vladar, A. E. Critical dimension metrology and the scanning electron microscope. In: A. C. Diebold (ed)Handbook of Silicon Semiconductor Metrology. Marcel Dekker Inc, New York-Basel (2001).
Carlini, L., Holden, S. J., Douglass, K. M.&Manley, S. Correction of a depth-dependent lateral distortion in 3D super-resolution imaging.PLoS ONE10, e0142949 (2015)..
Abrahamsson, S. et al. Fast multicolor 3D imaging using aberration-corrected multifocus microscopy.Nat. Methods10, 60–63 (2013)..
Dong, B. Q. et al. Super-resolution spectroscopic microscopy via photon localization.Nat. Commun.7, 12290 (2016)..
0
Views
0
Downloads
0
CSCD
Publicity Resources
Related Articles
Related Author
Related Institution
京公网安备11010802024621