
1.College of Chemistry, University of California, Berkeley, CA, USA
2.Division of Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
3.Chan Zuckerberg Biohub, San Francisco, CA, USA
Ke Xu (xuk@berkeley.edu)
Published:30 June 2021,
Published Online:08 May 2021,
Received:29 December 2020,
Revised:13 April 2021,
Accepted:15 April 2021
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Chen, K. et al. Excitation spectral microscopy for highly multiplexed fluorescence imaging and quantitative biosensing. Light: Science & Applications, 10, 1041-1052 (2021).
Chen, K. et al. Excitation spectral microscopy for highly multiplexed fluorescence imaging and quantitative biosensing. Light: Science & Applications, 10, 1041-1052 (2021). DOI: 10.1038/s41377-021-00536-3.
The multiplexing capability of fluorescence microscopy is severely limited by the broad fluorescence spectral width. Spectral imaging offers potential solutions
yet typical approaches to disperse the local emission spectra notably impede the attainable throughput. Here we show that using a single
fixed fluorescence emission detection band
through frame-synchronized fast scanning of the excitation wavelength from a white lamp via an acousto-optic tunable filter
up to six subcellular targets
labeled by common fluorophores of substantial spectral overlap
can be simultaneously imaged in live cells with low (~1%) crosstalks and high temporal resolutions (down to ~10 ms). The demonstrated capability to quantify the abundances of different fluorophores in the same sample through unmixing the excitation spectra next enables us to devise novel
quantitative imaging schemes for both bi-state and Förster resonance energy transfer fluorescent biosensors in live cells. We thus achieve high sensitivities and spatiotemporal resolutions in quantifying the mitochondrial matrix pH and intracellular macromolecular crowding
and further demonstrate
for the first time
the multiplexing of absolute pH imaging with three additional target organelles/proteins to elucidate the complex
Parkin-mediated mitophagy pathway. Together
excitation spectral microscopy provides exceptional opportunities for highly multiplexed fluorescence imaging. The prospect of acquiring fast spectral images without the need for fluorescence dispersion or care for the spectral response of the detector offers tremendous potential.
Lichtman, J. W.&Conchello, J. A. Fluorescence microscopy.Nat. Methods2, 910–919 (2005)..
Peng, X. H. et al. High spatiotemporal resolution and low photo-toxicity fluorescence imaging in live cells and in vivo.Biochem. Soc. Trans.47, 1635–1650 (2019)..
Tamura, T.&Hamachi, I. Recent progress in design of protein-based fluorescent biosensors and their cellular applications.ACS Chem. Biol.9, 2708–2717 (2014)..
Pietraszewska-Bogiel, A.&Gadella, T. W. J. FRET microscopy: from principle to routine technology in cell biology.J. Microsc.241, 111–118 (2011)..
Greenwald, E. C., Mehta, S.&Zhang, J. Genetically encoded fluorescent biosensors illuminate the spatiotemporal regulation of signaling networks.Chem. Rev.118, 11707–11794 (2018)..
Algar, W. R. et al. FRET as a biomolecular research tool-understanding its potential while avoiding pitfalls.Nat. Methods16, 815–829 (2019)..
Zimmermann, T., Rietdorf, J.&Pepperkok, R. Spectral imaging and its applications in live cell microscopy.FEBS Lett.546, 87–92 (2003)..
Garini, Y., Young, I. T.&McNamara, G. Spectral imaging: principles and applications.Cytom. Part A69A, 735–747 (2006)..
Gao, L.&Smith, R. T. Optical hyperspectral imaging in microscopy and spectroscopy-a review of data acquisition.J. Biophotonics8, 441–456 (2015)..
Elliott, A. D. et al. Real-time hyperspectral fluorescence imaging of pancreatic β-cell dynamics with the image mapping spectrometer.J. Cell Sci.125, 4833–4840 (2012)..
Wang, Y. et al. Multicolor fluorescent imaging by space-constrained computational spectral imaging.Opt. Express27, 5393–5402 (2019)..
Zhang, Z. Y. et al. Ultrahigh-throughput single-molecule spectroscopy and spectrally resolved super-resolution microscopy.Nat. Methods12, 935–938 (2015)..
Song, K. H. etal. Symmetrically dispersed spectroscopic single-molecule localization microscopy.Light Sci. Appl.9, 92 (2020)..
Gat, N. Imaging spectroscopy using tunable filters: a review. Proceedings of SPIE 4056, Wavelet Applications Ⅶ (SPIE, 2000).
Favreau, P. F. et al. Thin-film tunable filters for hyperspectral fluorescence microscopy.J. Biomed. Opt.19, 011017 (2013)..
Wachman, E. S., Niu, W. H.&Farkas, D. L. AOTF microscope for imaging with increased speed and spectral versatility.Biophys. J.73, 1215–1222 (1997)..
Bei, L. et al. Acousto-optic tunable filters: fundamentals and applications as applied to chemical analysis techniques.Prog. Quantum Electron.28, 67–87 (2004)..
Frank, J. H. et al. A white light confocal microscope for spectrally resolved multidimensional imaging.J. Microsc.227, 203–215 (2007)..
Owen, D. M. et al. Excitation-resolved hyperspectral fluorescence lifetime imaging using a UV-extended supercontinuum source.Opt. Lett.32, 3408–3410 (2007)..
Favreau, P. F. et al. Excitation-scanning hyperspectral imaging microscope.J. Biomed. Opt.19, 046010 (2014)..
Valm, A. M. et al. Applying systems-level spectral imaging and analysis to reveal the organelle interactome.Nature546, 162–167 (2017)..
Lewis, S. C., Uchiyama, L. F.&Nunnari, J. ER-mitochondria contacts couple mtDNA synthesis with mitochondrial division in human cells.Science353, aaf5549 (2016)..
Wong, Y. C., Ysselstein, D.&Krainc, D. Mitochondria-lysosomecontacts regulate mitochondrial fission via RAB7 GTP hydrolysis.Nature554, 382–386 (2018)..
Qin, J. S. et al. ER-mitochondria contacts promote mtDNA nucleoids active transportation via mitochondrial dynamic tubulation.Nat. Commun.11, 4471 (2020)..
Olzmann, J. A.&Carvalho, P. Dynamics and functions of lipid droplets.Nat. Rev. Mol. Cell Biol.20, 137–155 (2019)..
Tantama, M., Hung, Y. P.&Yellen, G. Imaging intracellular pH in live cells with a genetically encoded red fluorescent protein sensor.J. Am. Chem. Soc.133, 10034–10037 (2011)..
Rosselin, M. et al. L-OPA1 regulates mitoflash biogenesis independently from membrane fusion.EMBO Rep.18, 451–463 (2017)..
Llopis, J. et al. Measurement of cytosolic, mitochondrial, and Golgi pH in single living cells with green fluorescent proteins.Proc. Natl Acad. Sci. USA95, 6803–6808 (1998)..
Stryer, L. Fluorescence spectroscopy of proteins.Science162, 526–533 (1968)..
Lam, A. J. et al. Improving FRET dynamic range with bright green and red fluorescent proteins.Nat. Methods9, 1005–1012 (2012)..
Boersma, A. J., Zuhorn, I. S.&Poolman, B. A sensor for quantification of macromolecular crowding in living cells.Nat. Methods12, 227–229 (2015)..
Sukenik, S. et al. In-cell titration of small solutes controls protein stability and aggregation.J. Am. Chem. Soc.140, 10497–10503 (2018)..
Sinha, B. et al. Cells respond to mechanical stress by rapid disassembly of caveolae.Cell144, 402–413 (2011)..
Hoffmann, E. K., Lambert, I. H.&Pedersen, S. F. Physiology of cell volume regulation in vertebrates.Physiol. Rev.89, 193–277 (2009)..
Youle, R. J.&Narendra, D. P. Mechanisms of mitophagy.Nat. Rev. Mol. Cell Biol.12, 9–14 (2011)..
Jin, S. M.&Youle, R. J. PINK1- and Parkin-mediated mitophagy at a glance.J. Cell Sci.125, 795–799 (2012)..
Katayama, H. et al. A sensitive and quantitative technique for detecting autophagic events based on lysosomal delivery.Chem. Biol.18, 1042–1052 (2011)..
Katayama, H. et al. Visualizing and modulating mitophagy for therapeutic studies of neurodegeneration.Cell181, 1176–1187 (2020)..
Wei, L. et al. Super-multiplex vibrational imaging.Nature544, 465–470 (2017)..
Niehörster, T. et al. Multi-target spectrally resolved fluorescence lifetime imaging microscopy.Nat. Methods13, 257–262 (2016)..
Power, R. M.&Huisken, J. A guide to light-sheet fluorescence microscopy for multiscale imaging.Nat. Methods14, 360–373 (2017)..
Wu, Y. C.&Shroff, H. Faster, sharper, and deeper: structured illumination microscopy for biological imaging.Nat. Methods15, 1011–1019 (2018)..
Poudel, C.&Kaminski, C. F. Supercontinuum radiation in fluorescence microscopy and biomedical imaging applications.J. Opt. Soc. Am. B36, A139–A153 (2019)..
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