Polarization-sensitive intensity diffraction tomography

Seungri Song; Jeongsoo Kim; Taegyun Moon; Baekcheon Seong; Woovin Kim; Chang-Hyuk Yoo; Jun-Kyu Choi; Chulmin Joo

doi:10.1038/s41377-023-01151-0

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Polarization-sensitive intensity diffraction tomography

Original Articles

- Polarization-sensitive intensity diffraction tomography
- Light: Science & Applications Vol. 12, Issue 6, Pages: 1071-1083(2023)
- Affiliations：
  
  1.Department of Mechanical Engineering, Yonsei University, Seoul 03722, Republic of Korea
  2.Small Machines Company, Ltd., Seoul 04808, Republic of Korea
- Author bio：
  
  Chulmin Joo (cjoo@yonsei.ac.kr)
- Funds：
- DOI：10.1038/s41377-023-01151-0
  CLC：
- Published：30 June 2023，
  
  Published Online：18 May 2023，
  
  Received：5 September 2022，
  
  Revised：7 April 2023，
  
  Accepted：10 April 2023
Scan for full text
Song, S. et al. Polarization-sensitive intensity diffraction tomography. Light: Science & Applications, 12, 1071-1083 (2023).
DOI：

Song, S. et al. Polarization-sensitive intensity diffraction tomography. Light: Science & Applications, 12, 1071-1083 (2023). DOI： 10.1038/s41377-023-01151-0.

摘要

Abstract

Optical anisotropy

which is an intrinsic property of many materials

originates from the structural arrangement of molecular structures

and to date

various polarization-sensitive imaging (PSI) methods have been developed to investigate the nature of anisotropic materials. In particular

the recently developed tomographic PSI technologies enable the investigation of anisotropic materials through volumetric mappings of the anisotropy distribution of these materials. However

these reported methods mostly operate on a single scattering model

and are thus not suitable for three-dimensional (3D) PSI imaging of multiple scattering samples. Here

we present a novel reference-free 3D polarization-sensitive computational imaging technique—polarization-sensitive intensity diffraction tomography (PS-IDT)—that enables the reconstruction of 3D anisotropy distribution of both weakly and multiple scattering specimens from multiple intensity-only measurements. A 3D anisotropic object is illuminated by circularly polarized plane waves at various illumination angles to encode the isotropic and anisotropic structural information into 2D intensity information. These information are then recorded separately through two orthogonal analyzer states

and a 3D Jones matrix is iteratively reconstructed based on the vectorial multi-slice beam propagation model and gradient descent method. We demonstrate the 3D anisotropy imaging capabilities of PS-IDT by presenting 3D anisotropy maps of various samples

including potato starch granules and tardigrade.

关键词

Keywords

references

McLeod,E.&Ozcan,A.Unconventionalmethodsofimaging:computationalmicroscopyandcompactimplementations.Rep. Prog. Phys.79,076001(2016)..

Tian,L.&Waller,L.QuantitativedifferentialphasecontrastimaginginanLEDarraymicroscope.Opt. Express23,11394–11403(2015)..

Zheng,G.A.,Horstmeyer,R.&Yang,C.Wide-field,high-resolutionFourierptychographicmicroscopy.Nat. Photonics7,739–745(2013)..

Ou,X.Z.etal.QuantitativephaseimagingviaFourierptychographicmicroscopy.Opt. Lett.38,4845–4848(2013)..

Wu,Y.C.&Ozcan,A.Lenslessdigitalholographicmicroscopyanditsapplicationsinbiomedicineandenvironmentalmonitoring.Methods136,4–16(2018)..

Lee,W.etal.Single-exposurequantitativephaseimagingincolor-codedLEDmicroscopy.Opt. Express25,8398–8411(2017)..

Wang,Z.etal.Spatiallightinterferencemicroscopy(SLIM).Opt. Express19,1016–1026(2011)..

Jiang,S.W.etal.Wide-field,high-resolutionlenslesson-chipmicroscopyvianear-fieldblindptychographicmodulation.Lab Chip20,1058–1065(2020)..

Cuche,E.,Bevilacqua,F.&Depeursinge,C.Digitalholographyforquantitativephase-contrastimaging.Opt. Lett.24,291–293(1999)..

Popescu,G.etal.Fourierphasemicroscopyforinvestigationofbiologicalstructuresanddynamics.Opt. Lett.29,2503–2505(2004)..

Sung,Y.etal.Opticaldiffractiontomographyforhighresolutionlivecellimaging.Opt. Express17,266–277(2009)..

Antipa,N.etal.DiffuserCam:lenslesssingle-exposure3Dimaging.Optica5,1–9(2018)..

Chowdhury,S.etal.High-resolution3Drefractiveindexmicroscopyofmultiple-scatteringsamplesfromintensityimages.Optica6,1211–1219(2019)..

Yeh,L.H.etal.Speckle-structuredilluminationfor3Dphaseandfluorescencecomputationalmicroscopy.Biomed. Opt. Express10,3635–3653(2019)..

Li,J.J.etal.High-speedinvitrointensitydiffractiontomography.Adv. Photonics1,066004(2019)..

Li,J.J.etal.Transportofintensitydiffractiontomographywithnon-interferometricsyntheticapertureforthree-dimensionallabel-freemicroscopy.Light Sci. Appl.11,154(2022)..

Wolf,E.Three-dimensionalstructuredeterminationofsemi-transparentobjectsfromholographicdata.Opt. Commun.1,153–156(1969)..

Fercher,A.F.etal.Imageformationbyinversionofscatteredfielddata:experimentsandcomputationalsimulation.Appl. Opt.18,2427–2439(1979)..

Cha,S.&Vest,C.Interferometryandreconstructionofstronglyrefractingasymmetric-refractive-indexfields.Opt. Lett.4,311–313(1979)..

Park,Y.,Depeursinge,C.&Popescu,G.Quantitativephaseimaginginbiomedicine.Nat. Photonics12,578–589(2018)..

Liu,X.,Wang,B.Y.&Guo,C.S.One-stepJonesmatrixpolarizationholographyforextractionofspatiallyresolvedJonesmatrixofpolarization-sensitivematerials.Opt. Lett.39,6170–6173(2014)..

Park,K.etal.Jonesmatrixmicroscopyforlivingeukaryoticcells.ACS Photonics8,3042–3050(2021)..

Kemper,B.etal.inHandbook of Coherent-Domain Optical Methods(ed.Tuchin,V.V.)215–257(Springer,2013).

Colomb,T.etal.Polarizationmicroscopybyuseofdigitalholography:applicationtooptical-fiberbirefringencemeasurements.Appl. Opt.44,4461–4469(2005)..

Wang,Z.etal.Jonesphasemicroscopyoftransparentandanisotropicsamples.Opt. Lett.33,1270–1272(2008)..

Kim,Y.etal.Polarizationholographicmicroscopyforextractingspatio-temporallyresolvedJonesmatrix.Opt. Express20,9948–9955(2012)..

Zhang,Y.B.etal.Wide-fieldimagingofbirefringentsynovialfluidcrystalsusinglens-freepolarizedmicroscopyforgoutdiagnosis.Sci. Rep.6,28793(2016)..

Liu,T.R.etal.Deeplearning-basedholographicpolarizationmicroscopy.ACS Photonics7,3023–3034(2020)..

Hur,S.etal.Polarization-sensitivedifferentialphase-contrastmicroscopy.Opt. Lett.46,392–395(2021)..

Song,S.etal.Large-area,high-resolutionbirefringenceimagingwithpolarization-sensitiveFourierptychographicmicroscopy.ACS Photonics8,158–165(2021)..

Dai,X.etal.QuantitativeJonesmatriximagingusingvectorialFourierptychography.Biomed. Opt. Express13,1457–1470(2022)..

Ferrand,P.,Allain,M.&Chamard,V.Ptychographyinanisotropicmedia.Opt. Lett.40,5144–5147(2015)..

Baroni,A.etal.Jointestimationofobjectandprobesinvectorialptychography.Opt. Express27,8143–8152(2019)..

Liu,X.etal.Fiber-basedlenslesspolarizationholographyformeasuringJonesmatrixparametersofpolarization-sensitivematerials.Opt. Express25,7288–7299(2017)..

Kim,J.etal.Ptychographiclens-lesspolarizationmicroscopy.Preprintathttps://arxiv.org/abs/2209.06305https://arxiv.org/abs/2209.06305(2022).

Kim,S.,Cense,B.&Joo,C.Single-pixel,single-input-statepolarization-sensitivewavefrontimaging.Opt. Lett.45,3965–3968(2020)..

Seow,K.L.C.,Török,P.&Foreman,M.R.Singlepixelpolarimetricimagingthroughscatteringmedia.Opt. Lett.45,5740–5743(2020)..

Saba,A.etal.Polarization-sensitiveopticaldiffractiontomography.Optica8,402–408(2021)..

Yeh,L.H.etal.uPTI:uniaxialpermittivitytensorimagingofintrinsicdensityandanisotropy.inProceedings of the Novel Techniques in Microscopy 2021(OpticaPublishingGroup,2021).

Xu,S.Q.etal.Tensorialtomographicdifferentialphase-contrastmicroscopy.inProceedings of 2022 IEEE International Conference on Computational Photography1–11(IEEE,2022).

Shin,S.etal.Tomographicmeasurementofdielectrictensorsatopticalfrequency.Nat. Mater.21,317–327(2022)..

Kamilov,U.S.etal.Opticaltomographicimagereconstructionbasedonbeampropagationandsparseregularization.IEEE Trans. Comput. Imaging2,59–70(2016)..

Jones,R.C.AnewcalculusforthetreatmentofopticalsystemsI.Descriptionanddiscussionofthecalculus.J. Opt. Soc. Am.31,488–493(1941)..

deBoer,J.F.,Hitzenberger,C.K.&Yasuno,Y.Polarizationsensitiveopticalcoherencetomography—areview.Biomed. Opt. Express8,1838–1873(2017)..

Huard,S.Polarization of Light(NewYork:Wiley&Sons,1997).

Fujiwara,H.Spectroscopic Ellipsometry: Principles and Applications(JohnWiley&Sons,2007).

Rudin,L.I.,Osher,S.&Fatemi,E.Nonlineartotalvariationbasednoiseremovalalgorithms.Phys. D: Nonlinear Phenom.60,259–268(1992)..

Oldenbourg,R.Analysisofedgebirefringence.Biophys. J.60,629–641(1991)..

Balet,S.etal.RapidViscoAnalyser(RVA)asatoolformeasuringstarch-relatedphysiochemicalpropertiesincereals:areview.Food Anal. Methods12,2344–2360(2019)..

Ambigaipalan,P.etal.Structureoffababean,blackbeanandpintobeanstarchesatdifferentlevelsofgranuleorganizationandtheirphysicochemicalproperties.Food Res. Int.44,2962–2974(2011)..

Xu,F.etal.Physicochemicalandstructuralcharacterizationofpotatostarchwithdifferentdegreesofgelatinization.Foods10,1104(2021)..

Zhu,J.B.,Wang,H.&Tian,L.High-fidelityintensitydiffractiontomographywithanon-paraxialmultiple-scatteringmodel.Opt. Express30,32808–32821(2022)..

Lim,J.etal.High-fidelityopticaldiffractiontomographyofmultiplescatteringsamples.Light Sci. Appl.8,82(2019)..

Gross,V.etal.X-rayimagingofawaterbearoffersanewlookattardigradeinternalanatomy.Zool. Lett.5,14(2019)..

Gabriel,W.N.&Goldstein,B.SegmentalexpressionofPax3/7andEngrailedhomologsintardigradedevelopment.Dev. Genes Evol.217,421–433(2007)..

Hering,L.etal.Noveloriginoflamin-derivedcytoplasmicintermediatefilamentsintardigrades.eLife5,e11117(2016)..

Guidetti,R.etal.Distributionofcalciumandchitininthetardigradefeedingapparatusinrelationtoitsfunctionandmorphology.Integr. Comp. Biol.55,241–252(2015)..

Gabriel,W.N.etal.ThetardigradeHypsibius dujardini,anewmodelforstudyingtheevolutionofdevelopment.Dev. Biol.312,545–559(2007)..

Reddy,B.S.&Chatterji,B.N.AnFFT-basedtechniquefortranslation,rotation,andscale-invariantimageregistration.IEEE Trans. Image Process.5,1266–1271(1996)..

Chen,M.etal.Multi-layerBornmultiple-scatteringmodelfor3Dphasemicroscopy.Optica7,394–403(2020)..

Paszek,M.J.etal.Scanningangleinterferencemicroscopyrevealscelldynamicsatthenanoscale.Nat. Methods9,825–827(2012)..

Ivanov,I.E.etal.Correlativeimagingofthespatio-angulardynamicsofbiologicalsystemswithmultimodalinstantpolarizationmicroscope.Biomed. Opt. Express13,3102–3119(2022)..

Ge,B.L.etal.Single-shotquantitativepolarizationimagingofcomplexbirefringentstructuredynamics.ACS Photonics8,3440–3447(2021)..

Barutcu,S.etal.Limited-anglecomputedtomographywithdeepimageandphysicspriors.Sci. Rep.11,17740(2021)..

Zhou,K.C.&Horstmeyer,R.Diffractiontomographywithadeepimageprior.Opt. Express28,12872–12896(2020)..

McGuire,J.P.&Chipman,R.A.Polarizationaberrations.1.Rotationallysymmetricopticalsystems.Appl. Opt.33,5080–5100(1994)..

Jia,W.T.etal.Polarizationaberrationscorrectionsandpolarization-dependentimagingqualityanalysisinpolarizationlidars.Opt. Commun.495,127106(2021)..

Abrahamsson,S.etal.MultiFocusPolarizationMicroscope(MF-PolScope)for3Dpolarizationimagingofupto25focalplanessimultaneously.Opt. Express23,7734–7754(2015)..

Chen,L.etal.Advancesofsuper-resolutionfluorescencepolarizationmicroscopyanditsapplicationsinlifesciences.Comput. Struct. Biotechnol. J.18,2209–2216(2020)..

Lee,H.E.etal.Amino-acid-andpeptide-directedsynthesisofchiralplasmonicgoldnanoparticles.Nature556,360–365(2018)..

Chandel,S.etal.CompletepolarizationcharacterizationofsingleplasmonicnanoparticleenabledbyanovelDark-fieldMuellermatrixspectroscopysystem.Sci. Rep.6,26466(2016)..

Guler,U.&Turan,R.Effectofparticlepropertiesandlightpolarizationontheplasmonicresonancesinmetallicnanoparticles.Opt. Express18,17322–17338(2010)..

Sun,M.L.etal.High-resolution3DFourierptychographicreconstructionusingahemisphericalilluminationsourcewithmultiplexed-codedstrategy.Biomed. Opt. Express13,2050–2067(2022)..

Zhou,S.etal.AcceleratedFourierptychographicdiffractiontomographywithsparseannularLEDilluminations.J. Biophotonics15,e202100272(2022)..

Zhou,N.etal.Single-exposure3Dlabel-freemicroscopybasedoncolor-multiplexedintensitydiffractiontomography.Opt. Lett.47,969–972(2022)..

Beck,A.&Teboulle,M.Fastgradient-basedalgorithmsforconstrainedtotalvariationimagedenoisinganddeblurringproblems.IEEE Trans. Image Process.18,2419–2434(2009)..

Beck,A.&Teboulle,M.Afastiterativeshrinkage-thresholdingalgorithmforlinearinverseproblems.SIAM J. Imaging Sci.2,183–202(2009)..

Eckert,R.,Phillips,Z.F.&Waller,L.Efficientilluminationangleself-calibrationinFourierptychography.Appl. Opt.57,5434–5442(2018)..

Sun,J.S.etal.EfficientpositionalmisalignmentcorrectionmethodforFourierptychographicmicroscopy.Biomed. Opt. Express7,1336–1350(2016)..

Shin,S.etal.Reference-freepolarization-sensitivequantitativephaseimagingusingsingle-pointopticalphaseconjugation.Opt. Express26,26858–26865(2018)..

Yang,T.D.etal.Single-shotdigitalholographicmicroscopyforquantifyingaspatially-resolvedJonesmatrixofbiologicalspecimens.Opt. Express24,29302–29311(2016)..

Kagoshima,H.,Imura,S.&Suzuki,A.C.MolecularandmorphologicalanalysisofanAntarctictardigrade,Acutuncus antarcticus.J. Limnol.72,15–23(2013)..

Morek,W.etal.Anexperimentaltestofeutardigradepreparationmethodsforlightmicroscopy.Zool. J. Linn. Soc.178,785–793(2016)..

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